Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs766310 chr14:74612974 A/C 4.39E-7 177 25.47 27.27 7.4 KM Plot
PCPG rs76690611 chr3:182633052 T/C 3.94E-6 173 25.87 26.57 13.27 KM Plot
PCPG rs76696638 chr15:39749807 T/C 0.000433 177 24.85 27.27 26.33 KM Plot
PCPG rs76725690 chr12:6584679 G/C 0.000279 177 19.3 25.97 25.17 KM Plot
PCPG rs76734820 chr16:90024228 C/T 1.26E-8 172 25.67 20.2 6.62 KM Plot
PCPG rs76739945 chr17:1416955 C/T 1.23E-5 177 25.05 25.87 13.02 KM Plot
PCPG rs76745316 chr12:56627652 A/C 9.68E-8 178 25.17 29.13 0.8 KM Plot
PCPG rs76784033 chr16:89822793 T/C 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs76803469 chr7:158664562 A/G 0 177 25.53 20.37 3.17 KM Plot
PCPG rs76825441 chr16:56461397 A/G 0.000204 177 25.17 26.97 36.37 KM Plot
PCPG rs76846556 chr16:89932931 C/G 0.000214 171 25.77 22.63 36.37 KM Plot
PCPG rs76878821 chr2:176168250 A/G 0.000125 177 25.4 28.95 6.62 KM Plot
PCPG rs76885005 chr16:89966668 A/G 0.000157 175 25.87 21.5 36.37 KM Plot
PCPG rs76886830 chr1:227956596 C/T 4.62E-11 176 25.53 21.38 10.3 KM Plot
PCPG rs76896282 chr16:8762839 G/A 0 178 25.47 23.53 3.17 KM Plot